To Prep: Preheat oven to 350°F and place cupcake liners in a muffin tin.
In a large bowl, whisk together the flour, sugar, baking soda, baking powder, pumpkin pie spice and salt.
In a separate mixing bowl, combine the canned pumpkin, egg, butter and vanilla. Slowly pour the wet ingredients into the bowl of dry ingredients and gently stir to combine.
Pour the batter into the prepared pan, filling the cups no more than 2/3 of the way full.
In a small bowl, whisk together the filling ingredients. Scoop the cream cheese mixture into a piping bag and pipe a dollop (about 1-2TB) of the filling into the center of each muffin batter.
Sprinkle pepita seeds around the edges of the muffins and bake for 15 minutes.
Cool muffins on a wire rack, not in the pan.
Notes
Nutrition information is provided as an estimate only and will vary based on exact ingredients used and serving size.